Appendix 5. Taxon-by-character matrix used in phylogenetic analyses. Abbreviations: A, (0,1); B, (1,2); C, (0,2); D, (2,3); N, does not apply.
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | |
Homogalax protapirinus | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | A | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | A | A | 0 | 0 | 0 | ? | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | A | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | N | 0 | 0 | N | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ? | ? | ? | ? | ? | 0 | ? | ? | 0 | 0 |
Isectolophus latidens | 0 | ? | ? | ? | 0 | ? | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | ? | ? | ? | 1 | 1 | 0 | A | A | 0 | 0 | 0 | 0 | ? | 0 | 0 | 0 | A | 0 | A | A | 1 | 1 | 0 | ? | 0 | 1 | ? | ? | ? | 0 | 0 | ? | 0 | 0 | N | 0 | ? | N | 0 | 0 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | ? | 0 | 0 | 0 | 0 | 0 | ? | 0 |
Isectolophus annectens | 0 | ? | ? | ? | 0 | ? | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | ? | 0 | ? | ? | ? | 0 | 1 | 1 | 0 | 0 | 0 | 0 | ? | 0 | 1 | 0 | A | 0 | 0 | 0 | 1 | 1 | 0 | ? | ? | 0 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 0 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 0 |
Hyrachyus eximius | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 1 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | A | A | 0 | 0 | N | ? | D | 2 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | ? | ? | ? | 0 | 1 | 0 | 0 | 0 | N | 0 | 0 | N | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ? | 0 |
Hyrachyus modestus | 1 | 0 | ? | ? | 1 | 1 | 1 | 1 | 1 | B | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | A | 0 | C | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | ? | D | 2 | 0 | 0 | A | A | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | N | 0 | 0 | N | 0 | 0 | 1 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | ? | 0 |
Heptodon posticus | 1 | 0 | 1 | ? | 0 | 1 | ? | 1 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | ? | ? | ? | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 1 | ? | 0 | 0 | 1 | 0 | ? | ? | ? | 0 | 1 | 0 | 0 | 0 | N | 0 | 0 | N | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 1 | 0 | ? | 1 |
Heptodon calciculus | 1 | ? | 1 | 0 | 0 | 1 | 0 | A | A | A | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | ? | 0 | 0 | 0 | 1 | 0 | ? | ? | 1 | 1 | 1 | 0 | 1 | 0 | A | 0 | 0 | 0 | ? | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | ? | 0 | 0 | 0 | ? | ? | ? | 1 | ? | ? | ? | ? | 0 | 1 | B | 1 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 0 | 0 | ? | ? | 1 | 1 |
Helaletes nanus | 1 | 0 | 0 | ? | 0 | 1 | 0 | B | B | B | A | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 1 | B | 0 | 0 | 0 | 0 | A | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | A | A | 0 | A | A | 0 | 1 | 2 | 0 | A | 0 | A | 1 | 1 | 0 | 1 | 0 | 1 | 0 | ? | 0 | 0 | 2 | 0 | 1 | 1 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 2 | 0 | ? | 1 | 1 | 0 | 0 | 0 | 0 | N | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ? | 1 |
Dilophodon minusculus | 1 | ? | ? | ? | ? | ? | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | ? | 0 | 0 | 0 | 0 | 0 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 3 | B | 0 | 0 | 0 | 0 | A | A | 0 | 1 | 0 | 1 | 1 | ? | 0 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | A | ? | ? | ? | ? | 0 | ? | ? | ? | ? | 0 | 0 | ? | ? | ? | ? | 0 | ? | ? | ? | ? | ? | 1 |
Colodon occidentalis | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 2 | 2 | 2 | ? | 0 | 0 | A | 1 | 0 | 2 | 1 | 1 | A | A | 0 | 0 | 1 | 0 | 0 | 1 | 1 | ? | 1 | 2 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | A | 1 | 1 | ? | 0 | 0 | 5 | 0 | 0 | 0 | 1 | ? | 0 | ? | 0 | 0 | 1 | 2 | 1 | 1 | 1 | 0 | 0 | 0 | 2 | 0 | 1 | 0 | 1 | 0 | ? | 1 | ? | ? | 1 | 1 | 1 | 2 | ? | 1 |
New San Diego taxon | 1 | 0 | ? | ? | 0 | 1 | 1 | 1 | 1 | A | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | ? | 0 | 1 | 1 | 1 | 0 | A | 0 | A | 0 | 0 | 0 | 0 | 3 | 2 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | ? | ? | ? | 3 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | ? | 0 | 1 | ? | ? | 0 | 1 | 0 | 0 | 1 |
Plesiocolopirus hancocki | 1 | ? | ? | ? | ? | ? | 1 | 1 | 1 | 2 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | ? | 1 | 1 | ? | 0 | 0 | 0 | 1 | 0 | ? | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | ? | 1 | 2 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | ? | ? | ? | 3 | 0 | ? | ? | 1 | ? | ? | 0 | 0 | ? | 1 | 2 | ? | ? | ? | ? | 1 | ? | 1 | 1 | ? | ? | 0 | 0 | ? | ? | ? | ? | ? | ? | ? | ? | ? | 1 |
Protapirus simplex | 1 | ? | ? | ? | ? | ? | 1 | 0 | 0 | 2 | ? | 1 | 1 | ? | 0 | 0 | 0 | 2 | 2 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 2 | 0 | ? | 0 | 0 | 0 | 1 | ? | 1 | 0 | 1 | 1 | ? | ? | ? | 3 | 0 | 0 | 0 | 1 | ? | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | ? | 1 | 1 | 0 | 0 | 0 | 1 | 2 | ? | 1 |
Teleolophus medius | 1 | ? | ? | ? | ? | ? | 1 | 2 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 2 | 0 | 1 | 1 | 1 | 0 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 3 | 2 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | ? | 2 | ? | ? | ? | ? | ? | ? | ? | 0 | ? | 2 | 0 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 0 | ? | ? | ? | 1 |
Triplopus cubitalis | 1 | ? | ? | ? | ? | ? | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 2 | 1 | 0 | 0 | 2 | 0 | 1 | 0 | ? | ? | ? | ? | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 3 | 2 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | ? | 0 | 1 | 0 | ? | ? | ? | 0 | 0 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 1 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | ? | ? | 0 | 1 | 0 | 0 | 1 | ? | 0 |
Lophialetes expeditus | 1 | ? | ? | ? | ? | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | A | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | A | 0 | 2 | 0 | A | 0 | 1 | 1 | A | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 1 | ? | ? | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 1 | ? | 0 |
Eoletes gracilis | 1 | ? | ? | 0 | ? | 1 | 1 | 2 | 2 | 2 | 0 | 0 | 0 | A | A | 0 | 1 | 1 | 1 | 2 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | B | 0 | 0 | ? | ? | 1 | ? | ? | 0 | 0 | 1 | A | ? | ? | ? | 0 | ? | ? | ? | 0 | N | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 0 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 0 |
Schlosseria magister | 1 | ? | ? | ? | ? | ? | 1 | 2 | 2 | 2 | 0 | 0 | 1 | 0 | 0 | 1 | A | 1 | 0 | 1 | 1 | 0 | 0 | 0 | A | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | A | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | N | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ? | ? | ? | ? | 1 | 0 | ? | ? | ? | 0 |
Heteraletes leotanus | 1 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 1 | 1 | 1 | 0 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 0 | ? | ? | ? | ? | ? | ? | 0 | 0 | 0 | 0 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |
Miotapirus harrisonensis | 1 | 1 | 0 | 1 | 1 | 1 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | ? | ? | 1 | 1 | 1 | 1 | 0 | 2 | 1 | 0 | 1 | 1 | 1 | 0 | 3 | 2 | 0 | ? | 0 | 0 | 0 | 1 | ? | 1 | 0 | 1 | A | ? | ? | ? | ? | 0 | 0 | 0 | 1 | 0 | ? | 0 | 0 | 0 | 1 | 2 | ? | 1 | 1 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 0 | ? | ? | ? | 1 |
Plesiotapirus yagii | 1 | 1 | 0 | ? | 1 | 1 | ? | ? | ? | 2 | ? | 1 | 1 | ? | 1 | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | ? | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 0 | 1 | 1 | 1 | 0 | 3 | 2 | 0 | ? | 0 | 1 | 1 | 0 | ? | 1 | ? | 1 | ? | ? | ? | ? | 6 | 0 | 0 | ? | 1 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 0 | 1 | 0 | ? | 1 | 0 | ? | ? | ? | ? | ? | ? | ? | 1 | ? | ? | ? | ? |
Paratapirus helvetius | 1 | 1 | 1 | ? | ? | 1 | ? | 0 | ? | 2 | 0 | ? | ? | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | ? | 1 | 0 | ? | ? | 2 | 2 | 1 | 0 | 1 | 1 | 1 | 0 | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 5 | 0 | 0 | 0 | 1 | 1 | ? | 1 | ? | 0 | 1 | 2 | ? | 1 | 1 | 0 | 0 | 1 | 2 | 0 | 1 | 0 | 1 | ? | ? | ? | ? | ? | ? | ? | ? | ? | 0 | ? |
N. marslandensis | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | ? | 1 | 1 | 1 | 0 | 1 | A | A | 1 | A | ? | 0 | 1 | 0 | 1 | ? | 0 | 1 | 1 | ? | ? | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 5 | 3 | 0 | 2 | 1 | ? | ? | 0 | B | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 2 | 0 | 1 | ? | 0 | 0 | ? | 1 | ? | ? | ? | 0 | 1 | 2 | ? | ? |
Kalakotia simplicidentata | ? | ? | ? | ? | ? | ? | ? | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | N | 0 | ? | 0 | N | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ? | ? | ? | 0 | 0 | A | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | 0 |
Tapirus indicus | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | A | 0 | 0 | ? | 1 | 1 | 1 | 1 | 0 | 2 | 1 | 0 | 1 | 1 | 1 | 0 | D | 0 | 1 | ? | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 2 | 0 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 2 | 0 | 1 |