Alroy, J., Marshall, C.R., Bambach, R.K., Bezusko, K., Foote, M., Fursich, F.T., Hansen, T.A., Holland, S.M., Ivany, L.C., Jablonski, D., Jacobs, D.K., Jones, D.C., Kosnik, M.A., Lidgard, S., Low, S., Miller, A.I., Novack-Gottshall, P.M., Olszewski, T.D., Patzkowsky, M.E., Raup, D.M., Roy, K., Sepkoski, J.J., Jr., Sommers, M.G., Wagner, P.J., and Webber, A. 2001. Effects of sampling standardization on estimates of phanerozoic marine diversification. Proceedings of the National Academy of Sciences, 98:6261-6266.

Arrhenius, O. 1921. Species and area. The Journal of Ecology, 9:95-99.

Becker, R.A., Chambers, J.M., and Wilks, A.R. 1988. The New S Language. Wadsworth, Pacific Grove, California.

Benton, M.J., Wills, M.A., and Hitchin, R. 2000. Quality of the fossil record through time. Nature, 403:534-537.

Bivand, R.S., Pebesma, E.J., and Gómez-Rubio, V. 2008. Applied Spatial Data Analysis with R. Springer, New York.

Braun, W.J. and Murdoch, D.J. 2008. A First Course in Statistical Programming with R. Cambridge University Press, New York, NY, USA.

Bray, J.R. and Curtis, J.T. 1957. An ordination of the upland forest communities of southern Wisconsin. Ecological Monographs, 27:326-349.

Burnham, K.P. and Overton, W.S. 1978. Estimation of the size of a closed population when capture probabilities vary among animals. Biometrika, 65:625-633.

Burnham, K.P. and Overton, W.S. 1979. Robust estimation of population size when capture probabilities vary among animals. Ecology, 60:927-936.

Carrano, M. 2000. Taxonomy and classification of non-avian Dinosauria: Online Systematics Archive 4: The Paleobiology Database.

Carrasco, M., Kraatz, B., Davis, E., and Barnosky, A. 2005. Miocene Mammal Mapping Project (MIOMAP). Technical report, University of California Museum of Paleontology.

Chao, A. 1984. Non-parametric estimation of the number of classes in a population. Scandinavian Journal of Statistics, 11:265-270.

Chao, A. 1987. Estimating the population size for capture-recapture data with unequal catchability. Biometrics, 43:783-791.

Chao, A. and Lee, S.M. 1992. Estimating the number of classes via sample coverage. Journal of the American Statistical Association, 87:210-217.

Chao, A., Ma, M.C., and Yang, M.C.K. 1993. Stopping rules and estimation for recapture debugging with unequal failure rates. Biometrika, 80:193-201.

Chazdon, R., Colwell, R., Denslow, J., and Guariguata, M. 1998. Statistical methods for estimating species richness of woody regeneration in primary and secondary rain forests of NE Costa Rica, p. 285-309. In Dallmeier, F. and Comiskey, J. (eds.), Forest Biodiversity Research, Monitoring and Modeling: Conceptual Background and Old World Case Studies. Parthenon Publishing, Paris.

Clarke, K.R. 1993. Non-parametric multivariate analyses of changes in community structure. Australian Journal of Ecology, 18:117-143.

Coleman, B.D. 1981. On random placement and species-area relations. Mathematical Biosciences, 54:191-215.

Coleman, B.D., Mares, M.A., Willig, M.R., and Hsieh, Y.H. 1982. Randomness, area, and species richness. Ecology, 63:1121-1133.

Colwell, R. 2009. EstimateS: Statistical estimation of species richness and shared species from samples. Version 8.2.

Colwell, R.K. and Coddington, J.A. 1994. Estimating terrestrial biodiversity through extrapolation. Philosophical Transactions of the Royal Society B: Biological Sciences, 345:101-118.

Connor, E.F. and McCoy, E.D. 1979. The statistics and biology of the species-area relationship. The American Naturalist, 113:791-833.

Ezard, T.H. and Purvis, A. 2009. paleoPhylo: free software to draw paleobiological phylogenies. Paleobiology, 35:460-464.

Faith, D., Minchin, P., and Belbin, L. 1987. Compositional dissimilarity as a robust measure of ecological distance. Plant Ecology, 69:57-68.

Foote, M. 1992. Rarefaction analysis of morphological and taxonomic diversity. Paleobiology, 18:1-16.

Gleason, H.A. 1922. On the relation between species and area. Ecology, 3:158-162.

Gotelli, N.J. and Colwell, R.K. 2001. Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecology Letters, 4:379-391.

Gower, J.C. and Ross, G.J.S. 1969. Minimum spanning trees and single linkage cluster analysis. Journal of the Royal Statistical Society. Series C (Applied Statistics), 18:54-64.

Green, P.J. 2003. Diversities of gifts, but the same spirit. Journal of the Royal Statistical Society. Series D (The Statistician), 52:423-438.

Green, R.H. 1980. Multivariate approaches in ecology: The assessment of ecologic similarity. Annual Review of Ecology and Systematics, 11:1-14.

Hammer, Ø., Harper, D.A., and Ryan, P.D. 2001. PAST: Paleontological Statistics Software Package for Education and Data Analysis. Palaeontologia Electronica, 4:9.

Harrison, L.B. and Larsson, H.C.E. 2008. Estimating evolution of temporal sequence changes: A practical approach to inferring ancestral developmental sequences and sequence heterochrony. Systematic Biology, 57:378-387.

Heck, K.L., van Belle, G., and Simberloff, D. 1975. Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size. Ecology, 56:1459-1461.

Hortal, J., Borges, P., and Gaspar, C. 2006. Evaluating the performance of species richness estimators: sensitivity to sample grain size. Journal of Animal Ecology, 75:274-287.

Hubálek, Z. 1982. Coefficients of association and similarity, based on binary (presence-absence) data: An evaluation. Biological Reviews, 57:669-689.

Hunt, G. 2008. paleoTS: Modeling evolution in paleontological time-series. R package version 0.3.1.

Ihaka, R. and Gentleman, R. 1996. R: A language for data analysis and graphics. Journal of Computational and Graphical Statistics, 5:299-314.

Jaccard, P. 1901. Étude comparative de la distribution florale dans une portion des alpes et des jura. Bulletin del la Société Vaudoise des Sciences Naturelles, 37:547-579.

Lee, S.M. and Chao, A. 1994. Estimating population size via sample coverage for closed capture-recapture models. Biometrics, 50:88-97.

Leisch, F. and Rossini, A.J. 2003. Reproducible statistical research. Chance, 16:46-50.

Maddison, W.P. and Maddison, D. 2009. Mesquite: a modular system for evolutionary analysis. Version 2.72.

Magurran, A.E. 2004. Measuring Biological Diversity. Blackwell, Oxford.

Minchin, P.R. 1987. An evaluation of the relative robustness of techniques for ecological ordination. Plant Ecology, 69:89-107.

Oksanen, J., Blanchet, F.G., Kindt, R., Legendre, P., O'Hara, R.G., Simpson, G.L., Solymos, P., Stevens, M.H.H., and Wagner, H. 2010. vegan: Community Ecology Package. R package version 1.17-0.

Paradis, E., Claude, J., and Strimmer, K. 2004. Ape: analyses of phylogenetics and evolution in R language. Bioinformatics, 20:289-290.

Pebesma, E.J. and Bivand, R.S. 2005. Classes and methods for spatial data in R. R News, 5:9-13.

Preston, F.W. 1948. The commonness, and rarity, of species. Ecology, 29:254-283.

Preston, F.W. 1960. Time and space and the variation of species. Ecology, 41:611-627.

R Development Core Team. 2010. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.

Rosenzweig, M.L. 1995. Species Diversity in Space and Time. Cambridge University Press, Cambridge, UK.

Sanders, H.L. 1968. Marine benthic diversity: A comparative study. The American Naturalist, 102:243-282.

Shi, G.R. 1993. Multivariate data analysis in palaeoecology and palaeobiogeography - a review. Palaeogeography, Palaeoclimatology, Palaeoecology, 105:199-234.

Simpson, G. 1960. Notes on the measurement of faunal resemblance. American Journal of Science, 258:300-311.

Smith, E.P. and van Belle, G. 1984. Nonparametric estimation of species richness. Biometrics, 40:119-129.

Sneath, P.H.A. 1957. The application of computers to taxonomy. Journal of General Microbiology, 17:201-226.

Stabler, B. 2006. shapefiles: Read and Write ESRI Shapefiles. R package version 0.6.

Stallman, R. 1999. The GNU Operating System and the Free Software Movement, p. 53-70. In DiBona, C., Ockman, S. and Stone, M. (eds.), Open Sources: Voices from the Open Source Revolution. O'Reilly, Sebastopol, California.

Wolda, H. 1981. Similarity indices, sample size and diversity. Oecologia, 50:296-302.